Hello, I have tried to install RNAindel using pip, and was able to successfully install: "Successfully installed rnaindel-3.0.2" However, when I try "rnaindel -h", I get the error: Traceback (most recent call last): File "/home/ch196471/...
Show activity on this post. Am trying to use clr.AddReference and clr.AddReferenceToFile to import an assembly, but python (2.7) keeps making this error: Traceback (most recent call last): File "<pyshell#5>", line 1, in <module> clr.AddReference ("UnityEngine") AttributeError: 'module' object has no attribute 'AddReference'.
AttributeError: module 'pysam.libcalignmentfile' has no attribute 'PileupColumn' #1055. Closed lucygarner opened this issue Oct 25, 2021 · 1 comment Closed ... module 'pysam.libcalignmentfile' has no attribute 'PileupColumn' ...
Hi, I am trying to run bam2stats from cgat-apps within a fresh conda environment containing just cgat-apps and its dependencies. My command is: cgat bam2stats --force-output --output-filename-patte...
Hi, I installed cgat-apps in a fresh Conda environment as follows: conda create -n cgat-apps conda activate cgat-apps conda install -c conda-forge -c bioconda cgat-apps I did not use mamba as this ...
Attempting a pip install (after updating pip and wheel with "python -m pip install ... AttributeError: module 'pysam.libcalignmentfile' has no attribute ...
I try to use pysam together with multiprocessing but got this error pysam.libcalignmentfile.AlignmentFile.__reduce_cython__ TypeError: no default __reduce__ ...
Ok, Uninstalled using conda, also uninstalled using pip, then pip reinstalled seemed to fix it. Still getting some errors with other parts of the module but ...
AttributeError: module 'pysam.libcalignmentfile' has no attribute 'PileupColumn' PileupColumn was moved from libcalignmentfile to libcalignedsegment some years ago, and since pysam-developers/pysam#1007 (first released in 0.17.0) it no longer appears in libcalignmentfile.pxd at all — hence this error.
Jul 31, 2015 · Hi all, I am intending to work with SAM files in python, for which I need pysam. However, having installed pysam, I get the following error: >>> import pysam >>> samfile = pysam.AlignmentFile("ex1.bam", "rb") Traceback (most recent call last): File "", line 1, in AttributeError: 'module' object has no attribute 'AlignmentFile'
Hello, I have tried to install RNAindel using pip, and was able to successfully install: "Successfully installed rnaindel-3.0.2" However, when I try "rnaindel -h", I get the error: Traceback (most recent call last): File "/home/ch196471/...
Pysam is a python module that makes it easy to read and manipulate mapped short read ... AttributeError – if htsfile is SAM formatted and thus has no index.
31.07.2015 · Hi all, I am intending to work with SAM files in python, for which I need pysam. However, having installed pysam, I get the following error: >>> import pysam >>> samfile = pysam.AlignmentFile("ex1.bam", "rb") Traceback (most recent call last): File "", line 1, in AttributeError: 'module' object has no attribute 'AlignmentFile'