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To use this version, please load the module with ml KmerGenie/1.7044-foss-2016b. Here is an example of a shell script, sub.sh, ...

30.08.2015 · conda install. linux-64 v2015.08.30. osx-64 v2015.08.30. To install this package with conda run one of the following: conda install -c bioconda readfq. conda install -c bioconda/label/cf201901 readfq.

Try doing a one line python script (if it fails, do a pip install scipy and redo): from scipy.spatial.ckdtree import *.

26.07.2020 · ModuleNotFoundError：No module named xxx 罪魁祸首竟是虚拟环境！ModuleNotFoundError是什么意思？Pycharm的虚拟环境为什么虚拟环境会造成ModuleNotFoundError？怎么解决由虚拟环境造成的ModuleNotFoundError？总结ModuleNotFoundError是什么意思？ModuleNotFoundError：No module named XXX，这个错 …

Most troubling about the FASTA format is that there's no universal specification for the ... This line uses the readfq function in the readfq module to read ...

17.05.2018 · 最近多个小伙伴儿问“ImportError: No module named xxx“，应该怎么样解决。其实，问这个问题，还是因为你对python的基本方法没有掌握好，我也把这类问题的通用解决方法整理一下，希望对小伙伴儿们能够有帮助。报错现象：ImportError: No module named xxx（例如：ImportError: No module named pexpect）问题原因：...

I have been trying to run kmergenie for my data on ubuntu and every time I enter the code it gives an import error: no module named readfq.

A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version. Conda · Files · Labels · Badges.

09.08.2019 · My seqtk, which uses the kseq.h library, finishes the task in 24.6 seconds, 10X faster. For retrieving 25k sequences by name from the same FASTQ, BioPython takes 963 seconds, while readfq.py takes 136 seconds; BioPerl takes more than 40 minutes (killed), while readfq.pl 273 seconds. Seqtk takes 29 seconds.

readfq: the fastest fastq/fasta parser? By Heng Li https://github.com/lh3/readfq (found this indirectly via. @braincode. ) github.com.

应用场景本来是在pycharm里运行Python file，一切都很正常，然后为了让脚本自己乖乖地在服务器上跑，不占用IDE调试其他代码，所以决定用命令行直接在服务器上运行，结果报了如下错误：ModuleNotFoundError: No module named xxx其中 xxx 是项目中的子文件夹。

应用场景本来是在pycharm里运行Python file，一切都很正常，然后为了让脚本自己乖乖地在服务器上跑，不占用IDE调试其他代码，所以决定用命令行直接在服务器上运行，结果报了如下错误：ModuleNotFoundError: No module named xxx其中 xxx 是项目中的子文件夹。解决方案这小错误，用我闪亮而聪慧的大眼睛一看 ...

Oct 12, 2018 · kmergenie: Fix: No module named 'readfq' #493 Closed sjackman added a commit to sjackman/homebrew-bio that referenced this issue Oct 13, 2018

12.10.2018 · kmergenie: Fix: No module named 'readfq' #493. Closed sjackman added a commit to sjackman/homebrew-bio that referenced this issue Oct 13, 2018. kmergenie: Fix: No module named 'readfq' ...

16.06.2020 · ModuleNotFoundError: No module named xxx 的原因和解决办法（附带新大陆） zooyi962: 你好，我是用的github下载的包，这个包里面的其他自定义函数都可以用，但是有一个出现了No module named 'gtda.visualize.externals.modules' 想请教一下应该怎么办

07.10.2021 · 2. The path of the module is incorrect. The Second reason is Probably you would want to import a module file, but this module is not in the same directory. Project structure: core.py folder_1 ---module.py now, we want to import module.py. core.py. import module.py #incorrect output: ModuleNotFoundError: No module named 'module' core.py

recipe readfq. A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version. Homepage.

Aug 09, 2019 · Readfq is a collection of routines for parsing the FASTA/FASTQ format. It seamlessly parses both FASTA and multi-line FASTQ with a simple interface. Readfq is first implemented in a single C header file and then ported to Lua, Perl and Python as a single function less than 50 lines. For users of scripting languages, I encourage to copy-and ...

Oct 07, 2021 · 2. The path of the module is incorrect. The Second reason is Probably you would want to import a module file, but this module is not in the same directory. Project structure: core.py folder_1 ---module.py now, we want to import module.py. core.py. import module.py #incorrect output: ModuleNotFoundError: No module named 'module' core.py

kmergenie: ModuleNotFoundError: No module named 'readfq' #490. Closed. tseemann opened this issue on Oct 12, 2018 · 1 comment.

If you have tried all methods provided above but failed, maybe your module has the same name as a built-in module. Or, a module with the same name existing in a folder that has a high priority in sys.path than your module's. To debug, say your from foo.bar import baz complaints ImportError: No module named bar.

Aug 30, 2015 · conda install. linux-64 v2015.08.30. osx-64 v2015.08.30. To install this package with conda run one of the following: conda install -c bioconda readfq. conda install -c bioconda/label/cf201901 readfq.

If you have tried all methods provided above but failed, maybe your module has the same name as a built-in module. Or, a module with the same name existing in a folder that has a high priority in sys.path than your module's. To debug, say your from foo.bar import baz complaints ImportError: No module named bar.

Fast multi-line FASTA/Q reader in several programming languages - readfq/readfq.py at master · lh3/readfq

4.10 The structure of the file names.dmp, where the first, third, and ... yields RNA without introns (the sequences between exons in ...