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Cheers, Thomas On 23 Jul 2014, at 13:06, Matthew Baumgartner <mpb21@...> wrote: > Hi, I am using pymol from the SVN, and I have run into a problem when > using revision 4083. > When loading an sdf file of small molecules, pymol segfaults with the > following error: > > /usr/local/bin/pymol: line 3: 29872 Segmentation fault (core > dumped) "/usr ...

Subject: [PyMOL] Pymol segmentation fault Hi, I'm having an issue trying to run various plugins in pymol (apbs and autodock). Whenever I select a button that should bring up a file browser to choose a file (e.g. "Choose Externally generated pqr" in apbs) Pymol exits with: Segmentation fault (core dumped).

And all of them both GROMACS and pymol crash with the "Segmentation fault (core dumped)" error. I think its on the libc6 library (both o ...

Recently I finally managed to install the Nvidia driver. (NVIDIA-Linux-x86-1.0-7182-pkg1) for the graphics card (Quadro2 Pro/AGP/SSE2) on my Fedora Core 5 box. When I try and run pymol it crashed after I load a. pdb file and try and either right or left click on the main display. Here is the output from the pymol run:

on my Fedora Core 5 box. When I try and run pymol it crashed after I load a pdb file and try and either right or left click on the main display.

Subject: [PyMOL] Pymol segmentation fault Hi, I'm having an issue trying to run various plugins in pymol (apbs and autodock). Whenever I select a button that should bring up a file browser to choose a file (e.g. "Choose Externally generated pqr" in apbs) Pymol exits with: Segmentation fault (core dumped).

Enabled multithreaded rendering. Segmentation fault (core dumped). In general this is an indication, that the program ...

I tried reducing the bash script to only call pymol to identify where the problem was, it still gives the seg-fault core dumped error.

Recently I finally managed to install the Nvidia driver. (NVIDIA-Linux-x86-1.0-7182-pkg1) for the graphics card (Quadro2 Pro/AGP/SSE2) on my Fedora Core 5 box. When I try and run pymol it crashed after I load a. pdb file and try and either right or left click on the main display. Here is the output from the pymol run:

Ingen informasjon er tilgjengelig for denne siden.

Please help me for solving this error ajanihar@haresh:~$ pymol PyMOL(TM) Incentive Product - PyMOL Executable Build Copyright (C) ...

Cheers, Thomas On 23 Jul 2014, at 13:06, Matthew Baumgartner <mpb21@...> wrote: > Hi, I am using pymol from the SVN, and I have run into a problem when > using revision 4083. > When loading an sdf file of small molecules, pymol segfaults with the > following error: > > /usr/local/bin/pymol: line 3: 29872 Segmentation fault (core > dumped) "/usr ...

28.04.2015 · Segmentation fault " On Thu, Apr 30, 2015 at 4:40 AM, Michael Banck <mbanck@debian.org> wrote: > tags 783653 +unreproducible > thanks > > Hi, > > On Tue, Apr 28, 2015 at 02:57:55PM -0400, nbx909 wrote: > > Package: pymol > > Version: 1.7.2.1-1 > > Severity: important > > > > Dear Maintainer, > > > > Loading a pdb manually or through the fetch …

PyMOL is a cross-platform, free and open-source, molecular visualization ... error 1 Segmentation fault (core dumped) When select "set grid", the ... pymol.

Dec 01, 2012 · "Segmentation fault (core dumped)" is the string that Linux prints when a program exits with a SIGSEGV signal and you have core creation enabled. This means some program has crashed. If you're actually getting this error from running Python, this means the Python interpreter has crashed.

/pymol: line 3: 20414 Segmentation fault (core dumped) "/usr/bin/python" "/home/protein/pymol/lib/python/pymol/__init__.py" "$@" Henry -- Site24x7 APM ...

Apr 28, 2015 · tags 783653 +unreproducible thanks Hi, On Tue, Apr 28, 2015 at 02:57:55PM -0400, nbx909 wrote: > Package: pymol > Version: 1.7.2.1-1 > Severity: important > > Dear Maintainer, > > Loading a pdb manually or through the fetch command immediately results in a > segmentation fault and pymol closes.

30.11.2012 · Did your Python executable crash with a Segmentation fault (core dumped), or did it just print the line "Segmentation fault (core dumped)"? If it's the latter case, then yes, it means your Java program crashed. Let me edit the answer. – abarnert. Nov 30 '12 at 23:40.

Here is the error: [indigomad@localhost pymol-open-source-2.3.0]$ pymol /usr/bin/pymol: line 3: 2882 Segmentation fault (core dumped) ...

Oct 27, 2015 · apport-bug logs / core dump / backtrace. If you don't have an error message before segmentation fault. Run it with --save option and look for back-trace log: apport-bug program-cmd --save bug-report_output.txt gdb backtrace / debuging source code. If it didn't work, use gdb: $ gdb program-cmd (gdb) run (gdb) backtrace

... Product Copyright (C) Schrodinger, LLC This Executable Build integrates and extends Open-Source PyMOL. Segmentation fault (core dumped).