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In statsmodels 0.80, use import statsmodels.stats.multitest as multi; multi.multipletests(...) . – spinup. Apr 11 '18 at 6: ...

Source code for statsmodels.stats.multitest ... `fdr_tsbh` : two stage fdr correction (non-negative) `fdr_tsbky` : two stage fdr correction (non-negative) ...

statsmodels.stats.multitest.multipletests¶ statsmodels.stats.multitest. multipletests (pvals, alpha = 0.05, method = 'hs', is_sorted = False, returnsorted = False) [source] ¶ Test results and p-value correction for multiple tests

statsmodels.stats.multitest.fdrcorrection. statsmodels.stats.multitest.fdrcorrection(pvals, alpha=0.05, method='indep', is_sorted=False)[source] ¶. pvalue correction for false discovery rate. This covers Benjamini/Hochberg for independent or positively correlated and Benjamini/Yekutieli for general or negatively correlated tests.

statsmodels.stats.multitest.local_fdr¶. statsmodels.stats.multitest.local_fdr. Calculate local FDR values for a list of Z-scores. The assumed proportion of true null hypotheses. The density of null Z-scores; if None, use standard normal. The maximum exponent in the polynomial expansion of the density of non-null Z-scores.

Examples-----Basic use (the null Z-scores are taken to be standard normal): >>> from statsmodels.stats.multitest import local_fdr >>> import numpy as np >>> zscores = np.random.randn(30) >>> fdr = local_fdr(zscores) Use a Gaussian null distribution estimated from the data: >>> null = EmpiricalNull(zscores) >>> fdr = local_fdr(zscores, null_pdf ...

statsmodels.stats.multitest.fdrcorrection¶ statsmodels.stats.multitest.fdrcorrection (pvals, alpha=0.05, method='indep', is_sorted=False) [source] ¶ pvalue correction for false discovery rate. This covers Benjamini/Hochberg for independent or positively correlated and Benjamini/Yekutieli for general or negatively correlated tests.

statsmodels.stats.multitest.fdrcorrection(pvals, alpha=0.05, method='indep', is_sorted=False)[source] ¶. pvalue correction for false discovery rate. This covers Benjamini/Hochberg for independent or positively correlated and Benjamini/Yekutieli for general or negatively correlated tests. Parameters.

The following are 4 code examples for showing how to use statsmodels.stats.multitest.fdrcorrection().These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example.

The following are 7 code examples for showing how to use statsmodels.stats.multitest.multipletests().These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example.

statsmodels.stats.multitest.multipletests¶ statsmodels.stats.multitest. multipletests (pvals, alpha = 0.05, method = 'hs', is_sorted = False, returnsorted = False) [source] ¶ Test results and p-value correction for multiple tests. Parameters pvals array_like, 1-d. uncorrected p-values.

statsmodels.stats.multitest.fdrcorrection¶ ... pvalue correction for false discovery rate. This covers Benjamini/Hochberg for independent or positively correlated ...

statsmodels.stats.multitest.fdrcorrection¶ statsmodels.stats.multitest.fdrcorrection (pvals, alpha=0.05, method='indep', is_sorted=False) [source] ¶ pvalue correction for false discovery rate. This covers Benjamini/Hochberg for independent or positively correlated and Benjamini/Yekutieli for general or negatively correlated tests.

statsmodels/statsmodels/stats/multitest.py ... from statsmodels.stats. ... `fdr_tsbky` : two stage fdr correction (non-negative). is_sorted : bool.

Examples-----Basic use (the null Z-scores are taken to be standard normal): >>> from statsmodels.stats.multitest import local_fdr >>> import numpy as np >>> zscores = np.random.randn(30) >>> fdr = local_fdr(zscores) Use a Gaussian null distribution estimated from the data: >>> null = EmpiricalNull(zscores) >>> fdr = local_fdr(zscores, null_pdf ...

Python. statsmodels.stats.multitest.fdrcorrection () Examples. The following are 4 code examples for showing how to use statsmodels.stats.multitest.fdrcorrection () . These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by ...

Python fdrcorrection - 9 examples found. ... numpy.invert(inA)]) t, pvals = stats.ttest_ind(A, B) rejected, qvals = multitest.fdrcorrection(pvals, ...

Python statsmodels.stats.multitest.fdrcorrection() Examples. The following are 4 code examples for showing how to use ...

The following are 7 code examples for showing how to use statsmodels.stats.multitest.multipletests().These examples are extracted from open source projects. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example.

As examples, suppose we have 30 variables and we want to test for each of them whether ... import statsmodels.stats.multitest as smm rej, ...

statsmodels.stats.multitest.fdrcorrection ... This covers Benjamini/Hochberg for independent or positively correlated and Benjamini/Yekutieli for general or ...

python code examples for statsmodels.stats.multitest.fdrcorrection. Learn how to use python api statsmodels.stats.multitest.fdrcorrection.

Example: python fdr correction from statsmodels.stats.multitest import fdrcorrection rejected, q-value = fdrcorrection(my_list_of_p_values)